CeMEB Doctoral / Postdoctoral publications


Publications doctorats & post-doctorats 2020

Angell CS, Oudin MJ, Rode NO, Mautz BS, Bonduriansky R, Rundle HD (2020) Development time mediates the effect
of larval diet on ageing and mating success of male antler flies in the wild. 
Proceedings of the Royal Society B: Biological Sciences 287 (1938): 20201876. [CeMEB Post-Doc fellow]

Bas C, Imbert I, Clermont S, Reinert ME, Calvet C, Berté C, Vaissière A-C (2020) Approches anticipées et planifiées de la compensation écologique en Allemagne : vers un retour d'expérience pour la France ? Sciences, Eaux & Territoires 31: 44-48. [CeMEB Post-Doc fellow]

Briceño-Arias L, Kalise D, Kobeissi Z, Laurière M, González ÁM, Silva FJ (sous presse) On the implementation of a primal-dual algorithm for second order time-dependent mean field games with local couplings. ESAIM: Proceedings and Surveys: sous presse. [CeMEB Post-Doc fellow]

Calvet C, Delbar V, Chapron P, Brasebin M, Perret J, Moulherat S (2020) La biodiversité à l'épreuve des choix d'aménagement : une approche par la modélisation appliquée à la région Occitanie. Sciences, Eaux & Territoires 31: 24-31. [CeMEB Post-Doc fellow]

Chambert T, Imberdis L, Couloumy C, Bonet R, Besnard A (2020) Density dependence in Golden Eagle Aquila chrysaetos fecundity better explained by individual adjustment than territory heterogeneity. Ibis 162 (4): 1312-1323. [CeMEB Post-Doc fellow]

Gamble A, Garnier R, Chambert T, Gimenez O, Boulinier T (2020) Next-generation serology: integrating cross-sectional and capture-recapture approaches to infer disease dynamics. Ecology 101 (2): e02923. [CeMEB Post-Doc fellow]

Rode NO, Courtier-Orgogozo V, Débarre F (2020) Can a population targeted by a CRISPR- based homing gene drive be rescued? G3: Genes Genomes Genetics 10 (9): 3403- 3415. [CeMEB Post-Doc fellow]

Roy L, Taudière A, Papaïx J, Blatrix R, Chiron G, Zriki G, Bonato O, Barnagaud JY (2020) Evaluating the link between predation and pest control services in the mite world. Ecology and Evolution 10 (18): 9968-9980. [CeMEB Ph-D fellow]

Tournayre O, Leuchtmann M, Filippi-Codaccioni O, Trillat M, Piry S, Pontier D, Charbonnel N, Galan M (2020) In silico and empirical evaluation of twelve metabarcoding primer sets for insectivorous diet analyses. Ecology and Evolution 10 (13): 6310-6332. [CeMEB Ph-Doc fellow]

Vaissière A-CCalvet C, Quétier F, Latune J (2020a) Quelles implications possibles du monde agricole dans la compensation écologique ? Vers des approches territoriales. Sciences, Eaux & Territoires 31: 38-43. [CeMEB Post-Doc fellow]

Van der Geest M, Van der Heide T, Holmer M, DeWit R (2020) First field-based evidence that the seagrass-lucinid mutualism can mitigate sulfide stress in seagrasses. Frontiers in Marine Science 7: 11. [CeMEB Post-Doc fellow]

Zriki G, Blatrix R, Roy L (2020) Predation interactions among henhouse‐dwelling arthropods, with a focus on the poultry red mite Dermanyssus gallinaePest Management Science 76 (11): 3711-3719. [CeMEB Ph-D fellow]

Publications doctorats & post-doctorats 2019

Bykova O, Chuine I, Morin X (2019) Highlighting the importance of water availability in reproductive processes to understand climate change impacts on plant biodiversity. Perspectives in Plant Ecology, Evolution and Systematics 37: 20-25. [CeMEB Post-Doc fellow]

Calvet C, Le Coënt P, Quétier F, Napoleone C (2019) Challenges of achieving biodiversity offsetting through agri-environmental schemes: evidence from an empirical study. Ecological Economics 163: 113-125. [CeMEB Post-Doc fellow]

Calvet C, Salles JM (2019) Entre intégrité écologique et efficacité économique: analyse d’une politique d’absence de perte nette écologique. Revue juridique de l'environnement 44 (3): 517-529. [CeMEB Post-Doc fellow]

Calvez V, Gabriel P, González ÁM (2019) Limiting Hamilton-Jacobi equation for the large scale asymptotics of a subdiffusion jump-renewal equation. Asymptotic Analysis 115 (1-2): 63-94. [CeMEB Post-Doc fellow]

Clergeot PH, Rode NO, Glemin S, Brandstrom-Durling M, Ihrmark K, Olson A (2019) Estimating the fitness effect of deleterious mutations during the two phases of the life cycle: A new method applied to the root-rot fungus Heterobasidion parviporumGenetics 211 (3): 963-976. [CeMEB Post-Doc fellow]

Fréville H, Roumet P, Rode NO, Rocher A, Latreille M, Muller MH, David J (2019) Preferential helping to relatives: A potential mechanism responsible for lower yield of crop variety mixtures? Evolutionary Applications 12 (9): 1837-1849. [CeMEB Post-Doc fellow]

Gamble A, Garnier R, Jaeger A, Gantelet H, Thibault E, Tortosa P, Bourret V, Thiebot J-B, Delord K, Weimerskirch H, Tornos J, Barbraud C, Boulinier T (2019) Exposure of breeding albatrosses to the agent of avian cholera: dynamics of antibody levels and ecological implications. Oecologia 189 (4): 939-949. [CeMEB Post-Doc fellow]

Gervasi V, Linnell JDC, Broseth H, Gimenez O (2019) Failure to coordinate management in trans-boundary populations hinders the achievement of national management goals: the case of wolverines in Scandinavia. Journal of Applied Ecology 56 (8): 1905-1915. [CeMEB Post-Doc fellow]

Le Bot T, Lescroël A, Fort J, Péron C, Gimenez O, Provost P, Grémillet D (2019) Fishery discards do not compensate natural prey shortage in Northern gannets from the English Channel. Biological Conservation 236: 375-384. [CeMEB Ph-D]

Leauthaud C, Hiernaux P, Musila W, Kergoat L, Grippa M, Duvail S, Albergel J, Rode NO (2019) Influence of floods and growth duration on the productivity of wet grasslands of Echinochloa stagnina (Retz) P. Beauv. in an East African floodplain. Wetlands 39 (5): 935-944. [CeMEB Post-Doc fellow]

Mautz BS, Rode NO, Bonduriansky R, Rundle HD (2019) Comparing ageing and the effects of diet supplementation in wild vs. captive antler flies, Protopiophila litigataJournal of Animal Ecology 88 (12): 1913-1924. [CeMEB Post-Doc fellow]

Olazcuaga L, Rode NO, Foucaud J, Facon B, Ravigné V, Ausset A, Leménager N, Loiseau A, Gautier M, Estoup A, Hufbauer RA (2019) Oviposition preference and larval performance of Drosophila suzukii (Diptera: Drosophilidae), spotted-wing Drosophila: effects of fruit identity and composition. Environmental Entomology 48 (4): 867-881. [CeMEB Post-Doc fellow]

Potier S, Duriez O, Célérier A, Liegeois J-L, Bonadonna F (2019) Sight or smell: which senses do scavenging raptors use to find food? Animal Cognition 22 (1): 49-59. [CeMEB Ph-D]

Riquet F, Liautard-Haag C, Woodall L, Bouza C, Louisy P, Hamer B, Otero-Ferrer F, Aublanc P, Beduneau V, Briard O, Ayari TE, Hochscheid S, Belkhir K, Arnaud-Haond S, Gagnaire P-A, Bierne N (2019) Parallel pattern of differentiation at a genomic island shared between clinal and mosaic hybrid zones in a complex of cryptic seahorse lineages. Evolution 73 (4): 817-835. [CeMEB Post-Doc fellow]

Rode NO, Estoup A, Bourguet D, Courtier-Orgogozo V, Débarre F (2019) Population management using gene drive: molecular design, models of spread dynamics and assessment of ecological risks. Conservation Genetics 20 (4): 671-690. [CeMEB Post-Doc fellow]

Roussel S, Tardieu L, Vaissière A-C (2019) Compensation écologique et agriculture : est-ce compatible ? Revue Economique 70 (1): 123-137. [CeMEB Post-Doc fellow]

Saint-Pé K, Leitwein M, Tissot L, Poulet N, Guinand B, Berrebi P, Marselli G, Lascaux J-M, Gagnaire P-A, Blanchet S (2019) Development of a large SNPs resource and a low-density SNP array for brown trout (Salmo trutta) population genetics. BMC Genomics 20 (1): 582. [CeMEB Ph-D]

Tournayre O (2019) Génétique des populations et biologie de la conservation du Grand Rhinolophe. Plumes de Naturalistes 3: 249-258. [CeMEB Ph-D]

Tournayre O, Pons J-B, Leuchtmann M, Leblois R, Piry S, Filippi-Codaccioni O, Loiseau A, Duhayer J, Garin I, Mathews F, Puechmaille S, Charbonnel N, Pontier D (2019) Integrating population genetics to define conservation units from the core to the edge of Rhinolophus ferrumequinum Western range. Ecology and Evolution 9 (21): 12272-12290. [CeMEB Ph-D]

van der Geest M, van der Lely JAC, van Gils JA, Piersma T, Lok T (2019) Density-dependent growth of bivalves dominating the intertidal zone of Banc d’Arguin, Mauritania: importance of feeding mode, habitat and season. Marine Ecology Progress Series 610: 51-63. [CeMEB Post-Doc fellow]




Publications doctorats & post-doctorats 2018


Alba A, Vazquez AA, Sanchez J, Duval D, Hernandez HM, Sabourin E, Vittecoq M, Hurtrez-Bousses S, Gourbal B (2018) Fasciola hepatica-Pseudosuccinea columella interaction: effect of increasing parasite doses, successive exposures and geographical origin on the infection outcome of susceptible and naturally-resistant snails from Cuba. Parasites & Vectors 11 (1): 559. [CeMEB Ph-D]

Bourret V, Gamble A, Tornos J, Jaeger A, Delord K, Barbraud C, Tortosa P, Kada K, Thiebot J-B, Thibault E, Gantelet H, Weimerskirch H, Garnier R, Boulinier T (2018) Vaccination protects endangered albatross chicks against avian cholera. Conservation Letters 11: e12443. [CeMEB Post-Doc fellow]

Bykova O, Limousin J-M, Ourcival J-M, Chuine I (2018) Water deficit disrupts male gametophyte development in Quercus ilexPlant Biology 20 (3): 450-455. [CeMEB Post-Doc fellow]

Chu DKW, Hui KPY, Perera R, Miguel E, Niemeyer D, Zhao J, Channappanavar R, Dudas G, Oladipo JO, Traore A, Fassi-Fihri O, Ali A, Demissie GF, Muth D, Chan MCW, Nicholls JM, Meyerholz DK, Kuranga SA, Mamo G, Zhou Z, So RTY, Hemida MG, Webby RJ, Roger F, Rambaut A, Poon LLM, Perlman S, Drosten C, Chevalier V, Peiris M (2018) MERS coronaviruses from camels in Africa exhibit region-dependent genetic diversity. Proceedings of the National Academy of Sciences, USA 115 (12): 3144-3149. [CeMEB Post-Doc fellow]

Débarre F, Rode NO, Ugelvig L (2018) Gender equity at scientific events. Evolution Letters 2 (3): 148-158. [CeMEB Post-Doc fellow]

Galan M, Pons JB, Tournayre O, Pierre E, Leuchtmann M, Pontier D, Charbonnel N (2018) Metabarcoding for the parallel identification of several hundred predators and their preys: application to bat species diet analysis. Molecular Ecology Resources 18 (3): 474-489. [CeMEB Ph-D]

Holon F, Guilhem M, Valeriano P, Nicolas M, Thomas B, Pierre D, Anne-Sophie T, Pierre B, Julie D (2018) A  predictive model based on multiple coastal anthropogenic pressures explains the degradation status of a marine ecosystem: implications for management and conservation. Biological Conservation 222: 125–135. [CeMEB Ph-D]

Jaeger A, Lebarbenchon C, Bourret V, Bastien M, Lagadec E, Thiebot J-B, Boulinier T, Delord K, Barbraud C, Marteau C, Dellagi K, Tortosa P, Weimerskirch H (2018) Avian cholera outbreaks threaten seabird species on Amsterdam Island. PLoS ONE 13 (5): e0197291. [CeMEB Post-Doc fellow]

Leitwein M, Gagnaire PA, Desmarais E, Berrebi P, Guinand B (2018) Genomic consequences of a recent three-way admixture in supplemented wild brown trout populations revealed by local ancestry tracts. Molecular Ecology 27 (17): 3466-3483. [CeMEB Ph-D]

Potier S, Besnard MM, Schikorski D, Buatois B, Duriez O, Gabirot M, Leclaire S, Bonadonna F (2018a) Preen oil chemical composition encodes individuality, seasonal variation and kinship in black kites Milvus migransJournal of Avian Biology 49 (7): e01728. [CeMEB Ph-D]

Potier S, Bonadonna F, Martin GR, Isard P-F, Dulaurent T, Mentek, M., Duriez O (2018b) Visual configuration of two species of Falconidae with different foraging ecologies. Ibis 160: 54-61. [CeMEB Ph-D]

Potier S, Duriez O, Cunningham GB, Bonhomme V, O'Rourke C, Fernandez-Juricic E, Bonadonna F (2018c) Visual field shape and foraging ecology in diurnal raptors. Journal of Experimental Biology 221: jeb177295. [CeMEB Ph-D]

Sabourin E, Alda P, Vazquez A, Hurtrez-Bousses S, Vittecoq M (2018) Impact of human activities on fasciolosis transmission. Trends in Parasitology 34 (10): 891-903. [CeMEB Ph-D]

Vaissière A-C, Tardieu L, Quétier F, Roussel S (2018) Preferences for biodiversity offset contracts on arable land: a choice experiment study with farmers. European Review of Agricultural Economics 45 (3): 553-582. [CeMEB Post-Doc fellow]

Vázquez AA, Alda P, Lounnas M, Sabourin E, Alba A, Pointier JP, Hurtrez-Boussès S (2018) Lymnaeid snails hosts of Fasciola hepatica and Fasciola gigantica (Trematoda: Digenea): a worldwide review. CAB Reviews 13: 1-15. [CeMEB Ph-D]




Publications doctorats & post-doctorats 2017

Bouchet DC, Cheptou P-O, Munoz F (2017) Mowing influences community-level variation in resource-use strategies and flowering phenology along an ecological succession on Mediterranean road slopes. Applied Vegetation Science 20 (3): 376–387. [CeMEB Ph-D]

Hammoudi A, Iosifescu O, Bernoux M (2017) Mathematical analysis of a spatially distributed soil carbon dynamics model. Analysis and Applications 15 (6): 771-793. [CeMEB Ph-D]

Leclaire S, Bourret V, Bonadonna F (2017) Blue petrels recognize the odor of their egg. Journal of Experimental Biology 220 (17): 3022-3025. [CeMEB Post-Doc fellow]

Leitwein M, Guinand B, Pouzadoux J, Desmarais E, Berrebi P, Gagnaire P-A (2017) A dense brown trout (Salmo trutta) linkage map reveals recent chromosomal rearrangements in the Salmo genus and the impact of selection on linked neutral diversity. G3 Genes, Genomes, Genetics 7 (4): 1365-1376. [CeMEB Ph-D]

Levrel H, Scemama P, Vaissière AC (2017) Should we be wary of mitigation banking? Evidence regarding the risks associated with this wetland offset arrangement in Florida. Ecological Economics 135: 136-149. [CeMEB Post-Doc fellow]

Merle C, Leblois R, Rousset F, Pudlo P (2017) Resampling : an improvement of importance sampling in varying population size models. Theoretical Population Biology 114: 70–87. [CeMEB Ph-D]

Miguel E, Chevalier V, Ayelet G, Bencheikh MN, Boussini H, Chu D, El Berbri I, Fassi-Fihri O, Faye B, Grosbois V, Fekadu G, Perera M, Traore A, So T, Ng C, Roger F, Peiris M (2017) Risk factors for MERS coronavirus sero-prevalence and virus detection in dromedary camels in Ethiopia, Morocco and Burkina Faso. Eurosurveillance 22 (13): 30498. [CeMEB Post-Doc fellow]

Pioch S, Johnston MW, Vaissière AC, Berger F, Jacob C, Dodge R (2017) An update of the Visual_HEA software to improve the implementation of the Habitat Equivalency Analysis method. Ecological Engineering 105: 276-283. [CeMEB Post-Doc fellow]

Potier S, Bonadonna F, Martin GR, Isard P-F, Dulaurent T, Mentek, M., Duriez O (2017) Visual field and foveal characteristics of two species of Falconidae with different ecology. Ibis 160: 54-61. [CeMEB Ph-D]

Potier S, Mitkus M, Bonadonna F, Duriez O, Isard P-F, Dulaurent T, Mentek M, Kelber A (2017) Eye size, fovea and foraging ecology in accipitriform raptors. Brain, Behavior and Evolution 90: 232-242. [CeMEB Ph-D]

Riquet F, Simon A, Bierne N (2017) Weird genotypes? Don't discard them, transmissible cancer could be an explanation. Evolutionary Applications 10 (2): 140-145. [CeMEB Post-Doc fellow]

Vaissière AC, Levrel H, Scemama P (2017) Biodiversity offsetting: clearing up misunderstandings between conservation and economics to take further action. Biological Conservation 206: 258–262. [CeMEB Post-Doc fellow]






Publications doctorats & post-doctorats 2016

Boulinier T, Kada S, Ponchon A, Dupraz M, Dietrich M, Gamble A, Bourret V, Duriez O, Bazire R, Tornos J, Tveraa T, Chambert T, Garnier R, McCoy KD (2016) Migration, prospecting, dispersal? What host movement matters for infectious agent circulation? Integrative and Comparative Biology 56 (2): 330-342. [CeMEB Post-Doc fellow]

Doxa A, Holon F, Deter J, Villéger S, Boissery P, Mouquet N (2016) Mapping biodiversity in three-dimensions challenges marine conservation strategies: The example of coralligenous assemblages in North-Western Mediterranean sea. Ecological Indicators 61: 1042-1054. [CeMEB Ph-D]

Funk A, Goutard F, Miguel E, Bourgarel M, Chevalier V, Faye B, Peiris M, Kerkhove MV, Roger F (2016) Mers-coV at the animal–human interface: inputs on exposure pathways from an expert-opinion elicitation. Frontiers in Veterinary Science 3: 88. [CeMEB Post-Doc fellow]

Jacob C, Vaissière AC, Bas A, Calvet C (2016) Investigating the inclusion of ecosystem services in biodiversity offsetting. Ecosystem Services 21: 92-102. [CeMEB Post-Doc fellow]

Leitwein M, Gagnaire P-A, Desmarais E, Guendouz S, Rohmer M, Berrebi P, Guinand B (2016) Genome-wide nucleotide diversity of hatchery-reared Atlantic and Mediterranean strains of brown trout Salmo trutta compared to wild Mediterranean populations. Journal of Fish Biology 89 (6): 2717-2734. [CeMEB Ph-D]

Miguel E, Perera RAPM, Baubekova A, Chevalier V, Faye B, Akhmetsadykov N, al. e (2016) Absence of Middle East respiratory syndrome coronavirus in camelids, Kazakhstan, 2015. Emerging Infectious Disease 22 (3): 555-557. [CeMEB Post-Doc fellow]

Petersen JM, Kemper A, Gruber-Vodicka H, Cardini U, van der Geest M, Kleiner M, Bulgheresi S, Mußmann M, Herbold C, Seah BKB, Antony CP, Liu D, Belitz A, Weber M (2016) Chemosynthetic symbionts of marine invertebrate animals are capable of nitrogen fixation. Nature Microbiology 2: 16195. [CeMEB Post-Doc fellow]

Potier S, Bonadonna F, Kelber A, Duriez O (2016) Visual acuity in an opportunistic raptor, the chimango caracara (Milvago chimango). Physiology and Behavior 157: 125–128. [CeMEB Ph-D]

Potier S, Bonadonna F, Kelber A, Martin GR, Isard P-F, Dulaurent T, Duriez O (2016) Visual abilities in two raptors with different ecology. Journal of Experimental Biology 219: 2639-2649. [CeMEB Ph-D]

Tribot A-S, Mouquet N, Villéger S, Raymond M, Hoff F, Boissery P, Holon F, Deter J (2016) Taxonomic and functional diversity increase the aesthetic value of coralligenous reefs. Scientific Reports 6: 34229. [CeMEB Ph-D]

Vaissière AC, Bierry A, Quétier F (2016) Mieux compenser les impacts sur les zones humides : modélisation de différentes approches dans la région de Grenoble. Sciences Eaux & Territoires 21: 14-19. [CeMEB Post-Doc fellow]









Publications doctorats & post-doctorats 2015

Del’Ariccia G, Blanc L, Bonadonna F, Sanz-Aguilar A (2015) Mediterranean storm petrels rely on nest position for homing after migration: a test with artificial nest-boxes. Animal Behaviour 107: 97-104. [CeMEB Ph-D]

Hammoudi A, Iosifescu O, Bernoux M (2015) Mathematical analysis of a nonlinear model of soil carbon dynamics. Differential Equations and Dynamical Systems 23 (4): 453-466. [CeMEB Ph-D]

Holon F, Boissery P, Guilbert A, Freschet E, Deter J (2015) The impact of 85 years of coastal development on shallow seagrass beds (Posidonia oceanica L. (Delile)) in South Eastern France: A slow but steady loss without recovery. Estuarine, Coastal and Shelf Science 165: 204-212. [CeMEB Ph-D]

Holon F, Mouquet N, Boissery P, Bouchoucha M, Delaruelle G, Tribot A-S, Deter J (2015) Fine-scale cartography of human impacts along French Mediterranean coasts: a relevant map for the management of marine ecosystems. PLoS ONE 10 (8): e0135473. [CeMEB Ph-D]





Publications doctorats & post-doctorats 2014


Blanc L, Marboutin E, Gatti S, Zimmermann F, Gimenez O (2014) Improving abundance estimation by combining capture-recapture and occupancy data: example with a large carnivore. Journal of Applied Ecology 51 (6): 1733-1739. [CeMEB Ph-D]

Gimenez O, Blanc L, Besnard A, Pradel R, Doherty PF, Marboutin E, Choquet R (2014) Fitting occupancy models with E-SURGE: hidden Markov modelling of presence-absence data. Methods in Ecology and Evolution 5 (6): 592-597. [CeMEB Ph-D]

Le Saout S, Chollet S, Chamaille-Jammes S, Blanc L, Padie S, Verchere T, Gaston AJ, Gillingham MP, Gimenez O, Parker KL, Picot D, Verheyden H, Martin JL (2014) Understanding the paradox of deer persisting at high abundance in heavily browsed habitats. Wildlife Biology 20 (3): 122-135. [CeMEB Ph-D]

Publications doctorats & post-doctorats 2013

Blanc L, Marboutin E, Gatti S, Gimenez O (2013) Abundance of rare and elusive species: Empirical investigation of closed versus spatially explicit capture-recapture models with lynx as a case study. Journal of Wildlife Management 77 (2): 372-378. [CeMEB Ph-D]

Gimenez O, Abadi F, Barnagaud JY, Blanc L, Buoro M, Cubaynes S, Desprez M, Gamelon M, Guilhaumon F, Lagrange P, Madon B, Marescot L, Papadatou E, Papaix J, Peron G, Servanty S (2013) How can quantitative ecology be attractive to young scientists? Balancing computer/desk work with fieldwork. Animal Conservation 16 (2): 134-136. [CeMEB Ph-D]

Publications doctorats & post-doctorats 2012

Deter J, Descamp P, Ballesta L, Boissery P, Holon F (2012) A preliminary study toward an index based on coralligenous assemblages for the ecological status assessment of Mediterranean French coastal waters. Ecological Indicators 20: 345-352. [CeMEB Ph-D]

Deter J, Descamp P, Boissery P, Ballesta L, Holon F (2012) A rapid photographic method detects depth gradient in coralligenous assemblages. Journal of Experimental Marine Biology and Ecology 418: 75-82. [CeMEB Ph-D]

Publications doctorats & post-doctorats 2011


Descamp P, Holon F, Ballesta L, Guilbert A, Guillot M, Boissery P, Raimondino V, Deter J (2011) Fast and easy method for seagrass monitoring: application of acoustic telemetry to precision mapping of Posidonia oceanica beds. Marine Pollution Bulletin 62 (2): 284-292. [CeMEB Ph-D]


Galerie Photo